rs221858407 SNP Detail

Summary

• ID
  rs221858407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74549013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCACCTCTT CAGCTCTGGC TCCCACCACC
  ATTTTCCAGG CTACATCTCT TGACTACACC TGAGTACAAT CTGAGTCTGG GTCAGATTAT
  CCTGAAAACA TAGAGAGTTT CTTCTCCCTC CAGTTTGTGC TTTGTGAAGT TTTGCCTATA
  R
  CCTAAGGGAG CAACCCAACA GGCCATCCAC TTCCCATGTC ATCCAGACCA GCCAGTCCTC
  TCTAGCACTA GGATACTCTT CTTGGAACCA CTAAAGCCTG TCCTAGCCTC TGACCCCAAG
  TCAGACATCC TGCCTCCAGG CCCTTTTCCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320348124	CHEV_2_74556726	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221858407					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74549013 () rs orientation: forward

Symbol	Name	Function Class
Hoxd3	homeobox D3	Intron
Igs15	intergenic site 15	within coordinates
Rr559377	regulatory region 559377	1336 bp proximal
Tssr18437	transcription start site region 18437	1674 bp downstream