rs221866738 SNP Detail

Summary

• ID
  rs221866738
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99239566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATTCAGC TGCGTTTTAG
  AGTTCAGGCC ACACGCAAAA CATTCAAGCC AGCCGAAATT AGGAGTCTGG GGGGGCCTCC
  GCATATCTCC CCTGGGAGTC TGAGATACAA GATACTCAGG GAAGCAGAAG CCTCCAGCTC
  CAGGGGGCAG ATCTGTCACA CACTAACCCT CTGAAACGGA CTCCTTTGGT CAATGTTTGC
  K
  AAACATCCAA TCCTAAACGT CCTTGTTCCC CACCCGAGGA ATTAAGCTGG GGGTACAGAT
  TTTGTTTTTA CGTGAACCAG GTGGGGTTCT CAGGACCAGA TGCATTTGAG AAACCATAGC
  CATGCCAACC GCCACCAGGA AGCGGGTTTG TCTCTGGACT ACGAGTGTGC ACACGGCCCG
  CTCAAGCCCA TGGCATAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323135606	CHEV_9_99257932	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221866738					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99239566 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22193	CpG island 22193	114 bp proximal
Esyt3	extended synaptotagmin-like protein 3	within coordinates
Rr206935	regulatory region 206935	within coordinates
Tssr91051	transcription start site region 91051	1005 bp downstream