rs221873757 SNP Detail

Summary

• ID
  rs221873757
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190711209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAGACAG CTGTGTAGCA
  AGAAGACTCG AGGGTCCCCT CCAGCTTCAC GCATCCCTGG GTCCCCAGAT GTGGTGGACT
  GCCACGGTCC CACAGCGAGC GGGCACGTGA GCGCCCGGGG TTGGCGCGAG GGAGCCGCAG
  CAGCCTCTGC TTGTTAGGGA GGCCTGGCGT CTTCCCGGAA GCCCCCCGAA CCCTGGCGCG
  M
  GAGGGGCGGC TCCAGCCGGG GTTCCCGGGC AAGCGCAGCG CCGCCCCCTT CCCGCGGGTC
  CCGCGCGGGC ACCGCGAGTG GCAGCTGCGG GCCGCCACGA CGCGCGCGGG GCCCGGGGAC
  CCACCTCGGG CCGGCCTCAT TGCTGCAGAA GGCTGTTGGG GTTGAGGCGG TCGTCGCCTC
  ATTCCATGTC CCATTCTCGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352823501	MGP_WTSI_1_192802891	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221873757					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352823501	MGP_WTSI_1_192802891	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190711209 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1214	CpG island 1214	within coordinates
Tssr15741	transcription start site region 15741	14 bp upstream
Tssr15742	transcription start site region 15742	132 bp downstream
Tssr15743	transcription start site region 15743	148 bp downstream
Tssr15744	transcription start site region 15744	171 bp downstream
Tssr15745	transcription start site region 15745	183 bp downstream
Tssr15746	transcription start site region 15746	249 bp downstream
Tssr15747	transcription start site region 15747	268 bp downstream
Vash2	vasohibin 2	within coordinates