rs221873930 SNP Detail

Summary

• ID
  rs221873930
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25112504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTCAGTTTA GTACCAGATT GGACCAGGTC
  TTTACGGGAA TGTGGGAGGT AAAACTGGCC AAACAAAAGA AACCACACTC CAGAGAAAGG
  AACAAATGAC TGACACCTTG GCAtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
  R
  tgtatgCTTG ACTCCTCCCC CACTGTGGGG GGTTTCATTC TCTAAGCTTT TTTCTCACTT
  GAATTTCCGT GTACCTTTTG GCTGTTTAGA GCAAAACCGA GGCACTGCAG GCTGACAAAG
  AGAGGCTGAC AGCTGCGCTT CCTCTCTCCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322121688	CHEV_7_26198098	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221873930					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25112504 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	193 bp upstream
Rr160903	regulatory region 160903	1703 bp distal
Rr164493	regulatory region 164493	626 bp proximal
Rr170192	regulatory region 170192	753 bp distal
Rr170193	regulatory region 170193	within coordinates
Tssr2143	transcription start site region 2143	277 bp upstream
Tssr2144	transcription start site region 2144	129 bp upstream
Tssr2145	transcription start site region 2145	105 bp upstream
Tssr2146	transcription start site region 2146	92 bp upstream
Tssr2147	transcription start site region 2147	47 bp upstream
Tssr71243	transcription start site region 71243	263 bp upstream
Tssr71244	transcription start site region 71244	238 bp upstream
Tssr71245	transcription start site region 71245	223 bp upstream
Tssr71246	transcription start site region 71246	194 bp upstream
Tssr71247	transcription start site region 71247	166 bp upstream