rs221876020 SNP Detail

Summary

• ID
  rs221876020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:26866527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCTTATT TGCATTATGT
  GCTCCTCCCC TTCCACGCGA AAGCAGACAC GCAGGTTCAG TAAAAGGCGT TCTGTGAGTT
  CTCAAGACGG CCCCTTGGAG AGGGGTACAA AAGAGCAGTT TCACACAGAA AGGCCCACCC
  CTCGGAGCCA AAAGTGTCAG TGAACTTGTC AGCTGGGTTC TTGGCATTTG CTATGCAAAT
  R
  TCTCATTTAC ATGGGCCGCT CCTGCACACA GCCCAAGAGT ATATTGAGAA ATGACTGCGC
  AGTTAGTTGG AAAGTGTATG TAAATTCCTA CGTCAGTAAT TTACATAAGC ACTTAAAAAA
  AAATAACGGT GAGTACGGGA CGTCCTTAGA GAAGCGAAAC CGGGTAGAAC AAATGAGCAA
  ATGTGTACTA TTTGCATGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370831967	MGP_WTSI_7_27952121	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221876020					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370831967	MGP_WTSI_7_27952121	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:26866527 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18626	CpG island 18626	within coordinates
Egln2	egl-9 family hypoxia-inducible factor 2	300 bp upstream
Gm21983	predicted gene 21983	1328 bp downstream
Rab4b	RAB4B, member RAS oncogene family	1331 bp downstream
Rr400185	regulatory region 400185	within coordinates
Tssr2152	transcription start site region 2152	551 bp upstream
Tssr71351	transcription start site region 71351	709 bp upstream
Tssr71352	transcription start site region 71352	635 bp upstream
Tssr71353	transcription start site region 71353	580 bp upstream
Tssr71354	transcription start site region 71354	378 bp upstream
Tssr71355	transcription start site region 71355	337 bp upstream
Tssr71356	transcription start site region 71356	1583 bp downstream
Tssr71357	transcription start site region 71357	1626 bp downstream