rs221876357 SNP Detail

Summary

• ID
  rs221876357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84768258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCACCTT GTTGACTGGA
  CTCTTGGAAT GCATCGGTTT TGCTGGTGTC CTCTTTGGCT GGACTTCACT GTTGTTTGTG
  TTCAAAGCAG AAAACTACTT TTCAGAGCCC TGTGAACAGG ACTGCTTGCT CCAGAGCAAT
  GTAACAGGGC CTTCTGGTAA GGACAAAGAT GGCTTTTTCA TAGGAAGCTG TGCTTGGTTC
  Y
  TGGGAGTTGG GAAAGAATAG GAAGGTCTCT GTGCTTTACC CACCCTGCCA GCCTTTCCAT
  GGGGGGGGGG GACTGTCAGC CCCCTCTCAC CCCTTATGTG GAGGCTATCA AATGGGGAAG
  GAAGCACCTG GTTTTAGAGG GGGACCTTTA GAGACCAATA TATTTTAATG CACCTTGGTA
  GCTTTCTGGT CAGCAAAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354689963	MGP_WTSI_2_84778071	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221876357					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354689963	MGP_WTSI_2_84778071	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84768258 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11876	CpG island 11876	1049 bp distal
Rr57134	regulatory region 57134	within coordinates
Rr397102	regulatory region 397102	701 bp upstream
Rr397103	regulatory region 397103	1014 bp upstream
Slc43a3	solute carrier family 43, member 3	within coordinates
Tssr554	transcription start site region 554	641 bp downstream
Tssr18709	transcription start site region 18709	1308 bp downstream
Tssr18710	transcription start site region 18710	1202 bp downstream
Tssr18711	transcription start site region 18711	525 bp downstream
Tssr18712	transcription start site region 18712	280 bp downstream
Tssr18713	transcription start site region 18713	236 bp downstream
Tssr25061	transcription start site region 25061	502 bp downstream