rs221877729 SNP Detail

Summary

• ID
  rs221877729
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47720969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTATAGTT CCCCTTCCTG
  AAACGCAAAT TTTTGGGGGT GTTTTGAAGG GAAAAAAAGA AAGACAGTGA GATACTAGCT
  GGTTTATTTG TCGTGAAAGA AACAGGACTT GGTTACTTCC CCATGTGGAG AGGTAAATGG
  AAAATATGAG AAGAATTAGA ATAAATTATA GCTACATGTA ATTGGAAGAA ATGGCTGACT
  W
  TTTTTGGTGT TTAGTTCACT GAAGAAAATT TTGTTCAGAA AAATTGAGGT CTGTTTTGAG
  ATAATTTGAT TATCATTCGC GTCTTTTCTT TTTGATAAGG AAATCAGGAG TTCACTTCCA
  AGATGGAAAA CTCATCAGAT TCAGCATCGA CTTCACCTGA TGCTCCTCAG CCCAGTGAGA
  ATCCACCATC ACCACCGACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402629581	MGP_WTSI_19_47807020	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221877729					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402629581	MGP_WTSI_19_47807020	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47720969 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11035	CpG island 11035	409 bp distal
Gm58934	predicted gene, 58934	971 bp upstream
Rr370527	regulatory region 370527	1256 bp downstream
Rr406020	regulatory region 406020	291 bp downstream
Rr549123	regulatory region 549123	982 bp distal
Rr549124	regulatory region 549124	1312 bp distal
Rr549125	regulatory region 549125	1171 bp distal
Rr549126	regulatory region 549126	1043 bp distal
Rr549127	regulatory region 549127	838 bp distal
Rr549128	regulatory region 549128	47 bp distal
Sfr1	SWI5 dependent recombination repair 1	within coordinates
Tssr156884	transcription start site region 156884	762 bp downstream
Tssr156885	transcription start site region 156885	733 bp downstream
Tssr156886	transcription start site region 156886	415 bp upstream
Tssr156887	transcription start site region 156887	1122 bp upstream