rs221880947 SNP Detail

Summary

• ID
  rs221880947
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81200004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGAGGCTG TAGGGGACAC
  ATGCCCGGGC TGCACGTGGG AGAGATCACC TGGCTTACGG GGACACGGAC ACACGGGTCG
  GTAGCACGGC TTTATCAGAG CGCGGGTGTG AAAGCCGGAG GAGGCTGGCC GATGGCCGGG
  CAGGGCCGCT GCAGGCCCCG CTGTCTGAAG TCCTGCGCGG TGAAGCGCGG CCGCTGTGGC
  R
  GCGACAGGAG CGGCACATAG TCGGACCGCC AGGGCAGCTT TGCCCCGAAC TGGTTCCTGG
  TGACCACTGC GGACAGGACC GGACGAGCTC TGCAGCTGCG GGGCCGGGGG TGGGGGGGGG
  GCTCCCAAAT CCTTATGCTG ACCGAGCCCA CCAGGCCACG CCCATCCTGC GCTCCCGCAC
  CTCTGCCCAT TGCTGGCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381035135	MGP_WTSI_10_80826915	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221880947					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381035135	MGP_WTSI_10_80826915	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81200004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1975	CpG island 1975	within coordinates
Mfsd12	major facilitator superfamily domain containing 12	within coordinates
Rr435631	regulatory region 435631	1636 bp proximal
Tektip1	tektin bundle interacting protein 1	within coordinates
Tssr94743	transcription start site region 94743	132 bp downstream
Tssr94744	transcription start site region 94744	115 bp upstream
Tssr94745	transcription start site region 94745	150 bp upstream
Tssr94746	transcription start site region 94746	227 bp upstream
Tssr94747	transcription start site region 94747	245 bp upstream
Tssr98595	transcription start site region 98595	676 bp downstream
Tssr98596	transcription start site region 98596	1614 bp downstream
Tssr98597	transcription start site region 98597	1637 bp downstream
Tssr98598	transcription start site region 98598	1664 bp downstream