rs221882623 SNP Detail

Summary

• ID
  rs221882623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67469486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGGGTCCC GGTCCTGGTC
  CCGGACCCGG CGGCATTTGT GTTTCAGGTT CCTAATGGAG GGTTATTCTC ACGTAGCTGG
  AGGCGAAGGA GATGGAAGCA ACCCTCTGGG CGCCACGATT GCGCGCCGCA GCCACCAGCA
  CCGCTTCTTT AGCACGGGTG GTCAATTCTT CCGCCACCCC TCCCTAAGAC CTTGACAAAC
  R
  TAATCAAAGC CAAGGCGGTT GGCAGAACCG CTCTCGGCGC GCACAAGCGT TACAGCTTAG
  GGCACAAGGC CGACTGCTCC TCTATACTCG GTCTGGAACT TCATTTATGC GTAAAAGGGA
  CTTCTGGACT TTGGGCTCAC CACCCTAGGA ACCCCAAGTG GTCGGTCCGC AGTCTGTCCC
  CAGTGTTCAG AGGAGCCGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391397553	MGP_WTSI_14_67850874	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221882623					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391397553	MGP_WTSI_14_67850874	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67469486 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6656	CpG island 6656	1365 bp distal
Cpgi6657	CpG island 6657	within coordinates
Cpgi6658	CpG island 6658	1180 bp proximal
Ebf2	early B cell factor 2	1255 bp upstream
Gm20675	predicted gene 20675	400 bp downstream
Rr297417	regulatory region 297417	1485 bp distal
Rr297418	regulatory region 297418	within coordinates
Tssr126327	transcription start site region 126327	1145 bp upstream
Tssr126328	transcription start site region 126328	1249 bp upstream
Tssr126329	transcription start site region 126329	1398 bp upstream
Tssr126330	transcription start site region 126330	1865 bp upstream