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rs221892878 SNP Detail
Summary
  • ID
    rs221892878
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:44128725 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCATCTTTC TCCTCCTTCG
TCTCTTCATT TCACCTTTCT CTCCTTGCTC CTCCATTTCC CCCTTTTTTC ATCTCATTTT
CTTTTTCTTT TTTTTTTTTT TTGTTTTTGT TTTTGTTTTT GTTTTTTTTT TTTGCTTTTT
TGTTTTTGTT TTTTGTGGTT TTTAGAGACA GGGTTTCTCT GTGTAGCCCT GGCTGTCCTG
R
AATTCACTCT GTAGGCCAGG CTGGCCCCGA ACTCAGAAAT CCACCTGCCT CTGCCTCCCG
AGTTCTGGGA TTAAAGGCAT GTGCCACCAT GCCCGGCTCA TCTCATTTTC TTATTCTCCT
TCCTACTTCT CCATTGCTTC CTCTTTCCCC TCTCTCCTGC CTTTTCATTT ACTATTCTTT
TCCCCTTCTC CTCTTCTTCT                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156111 MGP_WTSI_7_51734671 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221892878 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156111 MGP_WTSI_7_51734671 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128725 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2224 transcription start site region 2224 1922 bp downstream
Tssr2225 transcription start site region 2225 1882 bp downstream
Tssr2226 transcription start site region 2226 1356 bp downstream
Tssr2227 transcription start site region 2227 281 bp downstream
Tssr2228 transcription start site region 2228 777 bp upstream
Tssr2229 transcription start site region 2229 1053 bp upstream
Tssr2230 transcription start site region 2230 1232 bp upstream
Tssr2231 transcription start site region 2231 1365 bp upstream
Tssr2232 transcription start site region 2232 1540 bp upstream
Tssr2233 transcription start site region 2233 1573 bp upstream
Tssr2234 transcription start site region 2234 1732 bp upstream
Tssr66242 transcription start site region 66242 1968 bp downstream
Tssr66243 transcription start site region 66243 1954 bp downstream
Tssr66244 transcription start site region 66244 1903 bp downstream
Tssr66245 transcription start site region 66245 1841 bp downstream
Tssr66246 transcription start site region 66246 1813 bp downstream
Tssr66247 transcription start site region 66247 1766 bp downstream
Tssr66248 transcription start site region 66248 1725 bp downstream
Tssr66249 transcription start site region 66249 1702 bp downstream
Tssr66250 transcription start site region 66250 1683 bp downstream
Tssr66251 transcription start site region 66251 1658 bp downstream
Tssr66252 transcription start site region 66252 1627 bp downstream
Tssr66253 transcription start site region 66253 1599 bp downstream
Tssr66254 transcription start site region 66254 1551 bp downstream
Tssr66255 transcription start site region 66255 1524 bp downstream
Tssr66256 transcription start site region 66256 1475 bp downstream
Tssr66257 transcription start site region 66257 1464 bp downstream
Tssr66258 transcription start site region 66258 1421 bp downstream
Tssr66259 transcription start site region 66259 1385 bp downstream
Tssr66260 transcription start site region 66260 1278 bp downstream
Tssr66261 transcription start site region 66261 1257 bp downstream
Tssr66262 transcription start site region 66262 1250 bp downstream
Tssr66263 transcription start site region 66263 1238 bp downstream
Tssr66264 transcription start site region 66264 1214 bp downstream
Tssr66265 transcription start site region 66265 1171 bp downstream
Tssr66266 transcription start site region 66266 1154 bp downstream
Tssr66267 transcription start site region 66267 1117 bp downstream
Tssr66268 transcription start site region 66268 1101 bp downstream
Tssr66269 transcription start site region 66269 1065 bp downstream
Tssr66270 transcription start site region 66270 1030 bp downstream
Tssr66271 transcription start site region 66271 998 bp downstream
Tssr66272 transcription start site region 66272 946 bp downstream
Tssr66273 transcription start site region 66273 928 bp downstream
Tssr66274 transcription start site region 66274 923 bp downstream
Tssr66275 transcription start site region 66275 903 bp downstream
Tssr66276 transcription start site region 66276 883 bp downstream
Tssr66277 transcription start site region 66277 863 bp downstream
Tssr66278 transcription start site region 66278 819 bp downstream
Tssr66279 transcription start site region 66279 774 bp downstream
Tssr66280 transcription start site region 66280 752 bp downstream
Tssr66281 transcription start site region 66281 712 bp downstream
Tssr66282 transcription start site region 66282 695 bp downstream
Tssr66283 transcription start site region 66283 681 bp downstream
Tssr66284 transcription start site region 66284 669 bp downstream
Tssr66285 transcription start site region 66285 655 bp downstream
Tssr66286 transcription start site region 66286 616 bp downstream
Tssr66287 transcription start site region 66287 580 bp downstream
Tssr66288 transcription start site region 66288 555 bp downstream
Tssr66289 transcription start site region 66289 473 bp downstream
Tssr66290 transcription start site region 66290 435 bp downstream
Tssr66291 transcription start site region 66291 409 bp downstream
Tssr66292 transcription start site region 66292 377 bp downstream
Tssr66293 transcription start site region 66293 355 bp downstream
Tssr66294 transcription start site region 66294 331 bp downstream
Tssr66295 transcription start site region 66295 66 bp downstream
Tssr66296 transcription start site region 66296 64 bp upstream
Tssr66297 transcription start site region 66297 107 bp upstream
Tssr66298 transcription start site region 66298 132 bp upstream
Tssr66299 transcription start site region 66299 201 bp upstream
Tssr66300 transcription start site region 66300 208 bp upstream
Tssr66301 transcription start site region 66301 232 bp upstream
Tssr66302 transcription start site region 66302 246 bp upstream
Tssr66303 transcription start site region 66303 287 bp upstream
Tssr66304 transcription start site region 66304 295 bp upstream
Tssr66305 transcription start site region 66305 305 bp upstream
Tssr66306 transcription start site region 66306 339 bp upstream
Tssr66307 transcription start site region 66307 396 bp upstream
Tssr66308 transcription start site region 66308 449 bp upstream
Tssr66309 transcription start site region 66309 470 bp upstream
Tssr66310 transcription start site region 66310 508 bp upstream
Tssr66311 transcription start site region 66311 585 bp upstream
Tssr66312 transcription start site region 66312 601 bp upstream
Tssr66313 transcription start site region 66313 622 bp upstream
Tssr66314 transcription start site region 66314 630 bp upstream
Tssr66315 transcription start site region 66315 650 bp upstream
Tssr66316 transcription start site region 66316 709 bp upstream
Tssr66317 transcription start site region 66317 721 bp upstream
Tssr66318 transcription start site region 66318 766 bp upstream
Tssr66319 transcription start site region 66319 789 bp upstream
Tssr66320 transcription start site region 66320 816 bp upstream
Tssr66321 transcription start site region 66321 834 bp upstream
Tssr66322 transcription start site region 66322 854 bp upstream
Tssr66323 transcription start site region 66323 900 bp upstream
Tssr66324 transcription start site region 66324 929 bp upstream
Tssr66325 transcription start site region 66325 959 bp upstream
Tssr66326 transcription start site region 66326 1000 bp upstream
Tssr66327 transcription start site region 66327 1014 bp upstream
Tssr66328 transcription start site region 66328 1030 bp upstream
Tssr66329 transcription start site region 66329 1069 bp upstream
Tssr66330 transcription start site region 66330 1088 bp upstream
Tssr66331 transcription start site region 66331 1102 bp upstream
Tssr66332 transcription start site region 66332 1123 bp upstream
Tssr66333 transcription start site region 66333 1171 bp upstream
Tssr66334 transcription start site region 66334 1183 bp upstream
Tssr66335 transcription start site region 66335 1192 bp upstream
Tssr66336 transcription start site region 66336 1201 bp upstream
Tssr66337 transcription start site region 66337 1219 bp upstream
Tssr66338 transcription start site region 66338 1275 bp upstream
Tssr66339 transcription start site region 66339 1326 bp upstream
Tssr66340 transcription start site region 66340 1371 bp upstream
Tssr66341 transcription start site region 66341 1416 bp upstream
Tssr66342 transcription start site region 66342 1478 bp upstream
Tssr66343 transcription start site region 66343 1510 bp upstream
Tssr66344 transcription start site region 66344 1655 bp upstream
Tssr66345 transcription start site region 66345 1688 bp upstream
Tssr66346 transcription start site region 66346 1744 bp upstream
Tssr66347 transcription start site region 66347 1782 bp upstream
Tssr66348 transcription start site region 66348 1823 bp upstream
Tssr66349 transcription start site region 66349 1847 bp upstream
Tssr66350 transcription start site region 66350 1875 bp upstream
Tssr66351 transcription start site region 66351 1883 bp upstream
Tssr66352 transcription start site region 66352 1919 bp upstream
Tssr66353 transcription start site region 66353 1993 bp upstream
Tssr72199 transcription start site region 72199 1818 bp upstream
Tssr72200 transcription start site region 72200 860 bp upstream
Tssr72201 transcription start site region 72201 350 bp upstream
Tssr72202 transcription start site region 72202 492 bp downstream
Tssr72203 transcription start site region 72203 878 bp downstream
Tssr72204 transcription start site region 72204 1474 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory