rs221896500 SNP Detail

Summary

• ID
  rs221896500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61181712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCATCATG GAACACAGCT
  CTGGAGGACT TGGTGTTTCT TTTTGTTTGT TTGTTTTTGT TTTTGTTTTA AGTGTTAAAC
  AAAGTAAAGG TTGTAAGGAC TTTGAGTCTT CGCATGCGCC ACACGCAAAC ACAGTCAGCA
  TCATCTTCTC CCCAGAGCTC AAGACAGGAG CCGTGAGCCA GCCCAGCCCT CCCCCTGAAA
  R
  CTGTGGAATG GACCCTGCCT GCCCTTCCCA CGGGAACTCC AGCAGATTCC TCTGCAGGAA
  GAGCTCCTGT GTGAATCCTG AGAGCCTGTC TTCCCCAGAG ATCCCTGAAT TAAAGGCTGG
  ATCCTGAGGT GACACTGTCG GAAGGTGACA GATTCCTTAA GAGGCGGGGC CAAGCAGGAA
  CTCTTGGATC ACTGGAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323328395	CHEV_10_60808681	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221896500					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61181712 () rs orientation: forward

Symbol	Name	Function Class
Pald1	phosphatase domain containing, paladin 1	within coordinates
Rr215533	regulatory region 215533	1312 bp distal
Rr215534	regulatory region 215534	1089 bp proximal
Rr228161	regulatory region 228161	1512 bp distal
Rr228162	regulatory region 228162	within coordinates