rs221898949 SNP Detail

Summary

• ID
  rs221898949
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51370420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGCTTT TTCTCATCCT
  CATCGGATAC CAGTATGGGC ACAAAAAGAA GGCTAGTAAG TAGAGCATGA GTGCCTTGCA
  TGTCTGGAGG TGTTGGGCAG AGAAAACATG TAGTCTCAAG ACATGTATAA ATTTCAGAGA
  TATTGCAATA TTTCCCATCT CCTAGAGTAT TAGTATAGTC ATAGGAAGGA ATTTAACAGT
  C
  CCTTTCTTCC TCTTAAAGTT TCTATTGTTG GAGCTTTCCC ATCCTCCTAG CAGATGCTTT
  TTCAATTCAT GCAGCTCAAA GAGAGGCCAA CTTACAAGTG CTTTCAACAG CACCAGACCC
  AACACACAGA GATAGACACC ACCAGGAGAA ATAATTCTTG CCATAGACCT TACTTCCACC
  TGATTGTCCC TGTCTTCACA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380379857	MGP_WTSI_10_51214130	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221898949					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380379857	MGP_WTSI_10_51214130	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51370420 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	within coordinates
Tssr93270	transcription start site region 93270	1583 bp downstream
Tssr93271	transcription start site region 93271	1465 bp downstream
Tssr93272	transcription start site region 93272	1410 bp downstream
Tssr93273	transcription start site region 93273	1139 bp downstream
Tssr93274	transcription start site region 93274	606 bp downstream
Tssr93275	transcription start site region 93275	473 bp downstream
Tssr93276	transcription start site region 93276	419 bp downstream
Tssr93277	transcription start site region 93277	371 bp downstream
Tssr93278	transcription start site region 93278	335 bp downstream
Tssr93279	transcription start site region 93279	179 bp downstream
Tssr93280	transcription start site region 93280	257 bp upstream
Tssr93281	transcription start site region 93281	297 bp upstream
Tssr93282	transcription start site region 93282	321 bp upstream
Tssr93283	transcription start site region 93283	398 bp upstream
Tssr93284	transcription start site region 93284	732 bp upstream
Tssr93285	transcription start site region 93285	957 bp upstream
Tssr93286	transcription start site region 93286	1071 bp upstream
Tssr93287	transcription start site region 93287	1433 bp upstream
Tssr93288	transcription start site region 93288	1693 bp upstream
Tssr93289	transcription start site region 93289	1761 bp upstream
Tssr97556	transcription start site region 97556	145 bp downstream
Tssr97557	transcription start site region 97557	510 bp downstream
Tssr97558	transcription start site region 97558	1697 bp downstream