rs221899343 SNP Detail

Summary

• ID
  rs221899343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:41272521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCAGATT TGGGACCTAT
  CAGGCCAATC ACGTCCATCC AGAACATGAC CAGCTGGAAA TGTATTGCAA TTGTTACTCA
  TTATTGCCAG AAAAGCATGA CTTGTATATA AAACATAAAT TAAGAGTTTA GTTACAAAGT
  GAGTCATAGG AGCCAAAATG AAAAGGATAG GTAAAGCCAC AAAAATATTA AGGAAATTAA
  R
  AAGATACTAA GCTAACAGAA TAGGCACAGG AAAGGTGTAA AAAGGAGATA CAGTATTAAT
  TTTTATAGCA CAAAGAAATA AGAGTTGAAG AGTGAAGTTA GATCTAAATG ATGAGAGGAA
  GAATCTTTTG GTATCTATTA ATAACTGTGA TAAGATAAAT TCAATTGTAT CAGTAATAGA
  GATTTAAAAC ACTGAAGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320245445	CHEV_2_41238029	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221899343					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:41272521 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr134	DNA Segment, Chr 2, Derry C. Roopenian 134	1517 bp proximal
Lrp1b	low density lipoprotein-related protein 1B	within coordinates
Rr556252	regulatory region 556252	284 bp proximal