rs221902727 SNP Detail

Summary

• ID
  rs221902727
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:24686383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTTGTT GATTTTGTTT
  TTGGCGAACC TGGCTTTCTG CTGTGTGGTG GTTTGTTTCC CTTCTAGTCT GGGTTTTCTA
  TTCTGGAGAC TCTGAAAGTA GGGAAGTGGC CTGAAGCAAG GAGGGGGGGT CAGGACTTGG
  AGCTCTAAGG GGACCATGCG ATGCATAGTG ACTTTCTGGC TCCTCCCCCG CCCCCCCCCC
  M
  CACGGAACCA TCTATCTGCC TTGCAGACGC AGACTGGGCT AAGGACTTCC CACAGCCTTG
  TGGAGGGAGT CCTGTTGGCC TTGCTCAGTC TAAATAATTC GAATTCTCCA AATTCGCGGG
  GTAATCCGCT TCACTCTCAA CCATGTAAAC TCTAGAGGAC ACACACACTC AAGCTATACT
  TGTAAATATT TGCTCTCCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ
ss376945186	MGP_WTSI_9_24579531	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	C	C	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ
rs221902727					SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	C	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376945186	MGP_WTSI_9_24579531	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:24686383 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21501	CpG island 21501	343 bp distal
Gm29824	predicted gene, 29824	637 bp upstream
Rr675417	regulatory region 675417	294 bp distal
Rr675418	regulatory region 675418	194 bp proximal
Rr675419	regulatory region 675419	695 bp proximal
Rr675420	regulatory region 675420	1145 bp proximal
Rr675421	regulatory region 675421	1903 bp proximal
Tbx20	T-box 20	803 bp upstream
Tssr88515	transcription start site region 88515	1905 bp upstream
Tssr88516	transcription start site region 88516	796 bp upstream