rs221917057 SNP Detail

Summary

• ID
  rs221917057
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115050169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTT AGACTCCCGT GGACGTAAAT
  Y
  TATCTCCCTT GTCTAATCAG ACTCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321653766	CHEV_5_115362117	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221917057					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115050169 () rs orientation: forward

Symbol	Name	Function Class
Oasl2	2'-5' oligoadenylate synthetase-like 2	within coordinates
Tssr48139	transcription start site region 48139	1086 bp downstream
Tssr48140	transcription start site region 48140	1052 bp downstream
Tssr48141	transcription start site region 48141	835 bp downstream
Tssr48142	transcription start site region 48142	745 bp downstream
Tssr48143	transcription start site region 48143	702 bp downstream
Tssr48144	transcription start site region 48144	662 bp downstream
Tssr48145	transcription start site region 48145	595 bp downstream
Tssr48146	transcription start site region 48146	529 bp downstream
Tssr48147	transcription start site region 48147	514 bp downstream
Tssr48148	transcription start site region 48148	448 bp downstream
Tssr48149	transcription start site region 48149	428 bp downstream
Tssr48150	transcription start site region 48150	415 bp downstream
Tssr48151	transcription start site region 48151	373 bp downstream
Tssr48152	transcription start site region 48152	315 bp downstream
Tssr48153	transcription start site region 48153	225 bp downstream
Tssr48154	transcription start site region 48154	209 bp downstream
Tssr52739	transcription start site region 52739	1105 bp upstream