rs221928586 SNP Detail

Summary

• ID
  rs221928586
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7193175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACACTAAA GAAAGCAACT
  TGGGCCTGAG GTTCAATCCC CAGCACAGGA GAGGGGGAGA TACAGACACA GAGAGACTCT
  AAGGATGGAG GGGACACTGG GTCAAGTCCA TTTCCAGCCT TGAAATAAAG GTCTTTGGTT
  TTTAAAAAGA TGTATTTATC TGTGGGGGGA AAGGGTGCAG GCAGGAGTCT TACTATGCAC
  Y
  CCACCCAGAC CTGGGCTTAA ACTTGAGATT CTCCTGTTCC TGATGCCCTG GTCCTGGAAA
  TACACTCAAG TGCCACTATG CTCACTGGTG TGTATGTGTG CTGTTTTCCA TGTGGGTGAA
  GGCCAGAGCT TGATGTCTGG CATCTCATCT AACAGCTCTC CATCTTTTCT TTCTTTCTTT
  CTTTCTTTCT TTTTTTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401688418	MGP_WTSI_19_7290300	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221928586					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401688418	MGP_WTSI_19_7290300	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7193175 () rs orientation: forward

Symbol	Name	Function Class
Cox8a	cytochrome c oxidase subunit 8A	within coordinates
Cpgi10550	CpG island 10550	1321 bp proximal
Gm59070	predicted gene, 59070	within coordinates
Rr405837	regulatory region 405837	1654 bp upstream
Rr543609	regulatory region 543609	1788 bp distal
Rr543610	regulatory region 543610	820 bp distal
Rr543611	regulatory region 543611	1796 bp proximal
Rr543612	regulatory region 543612	1875 bp proximal
Tssr157942	transcription start site region 157942	417 bp upstream
Tssr157943	transcription start site region 157943	1713 bp downstream
Tssr157944	transcription start site region 157944	1719 bp downstream
Tssr157945	transcription start site region 157945	1739 bp downstream