rs221930726 SNP Detail

Summary

• ID
  rs221930726
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27388617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGGAAT GGTCTTCACA
  ATGCATTCGT CGAAACCGCT TTAAATATTG TTAAAAGCGC ATTCAAGCGC CTTTCCTGAG
  TTCTAACTGG GATTTAAAAA AAAAAAAAAA AAAAAAAAAA GAAAGAAAGA AAAGATTTCT
  TTTTTTCCTG ATCTCCAACC AAGAACTGTC TCTTCTTTTC CTACCAAGAA ACTCGGCCAC
  R
  TAATTTTAAA ATACAAATTG CAGCTATGCT TCCATTCTGA AGCCAGATCC TCACTCCTTT
  TCTAATTTAT TTAAAAGTTC CTTCCTCACC ATGGAAAACG CCCGACGGGA AACGGGAACA
  CATGCAAATG TTAAGAACTC AAGACACTCA GAATGCCTTT TCCTTAGGCT TCAGAATCTG
  TCCCCAGTAA ACCGCTGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385383306	MGP_WTSI_12_28023483	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221930726					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385383306	MGP_WTSI_12_28023483	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27388617 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4506	CpG island 4506	129 bp proximal
Rr464225	regulatory region 464225	1323 bp distal
Rr464226	regulatory region 464226	within coordinates
Sox11	SRY (sex determining region Y)-box 11	within coordinates
Tssr113044	transcription start site region 113044	745 bp upstream
Tssr115967	transcription start site region 115967	1781 bp upstream
Tssr115968	transcription start site region 115968	1767 bp upstream
Tssr115969	transcription start site region 115969	1686 bp upstream
Tssr115970	transcription start site region 115970	1651 bp upstream
Tssr115971	transcription start site region 115971	1595 bp upstream
Tssr115972	transcription start site region 115972	1482 bp upstream
Tssr115973	transcription start site region 115973	1120 bp upstream
Tssr115974	transcription start site region 115974	1063 bp upstream
Tssr115975	transcription start site region 115975	1032 bp upstream
Tssr115976	transcription start site region 115976	1012 bp upstream
Tssr115977	transcription start site region 115977	994 bp upstream
Tssr115978	transcription start site region 115978	368 bp upstream
Tssr115979	transcription start site region 115979	278 bp upstream
Tssr115980	transcription start site region 115980	100 bp upstream
Tssr115981	transcription start site region 115981	565 bp downstream
Tssr115982	transcription start site region 115982	788 bp downstream
Tssr115983	transcription start site region 115983	1566 bp downstream
Tssr115984	transcription start site region 115984	1581 bp downstream
Tssr115985	transcription start site region 115985	1639 bp downstream
Tssr115986	transcription start site region 115986	1655 bp downstream
Tssr115987	transcription start site region 115987	1676 bp downstream
Tssr115988	transcription start site region 115988	1703 bp downstream
Tssr115989	transcription start site region 115989	1751 bp downstream
Tssr115990	transcription start site region 115990	1822 bp downstream
Tssr115991	transcription start site region 115991	1909 bp downstream
Tssr115992	transcription start site region 115992	2000 bp downstream