rs221934409 SNP Detail

Summary

• ID
  rs221934409
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141464774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGGCGGCC AGTCCTCGGG
  GGGCCGGACG AGGAGGAGCG GGAAGATGGA GCGGTGGCGG CGGGGCGGAG GGTGGCGGCC
  CCATGGCCCG GCCCCTGGCT GGCCCCGCGT CCCCGCCCTC CCTCTCGGCT TCCTCCCGCC
  GCCCGCCTGC GCCTGGGGGG CTGGTCCGGA GCAGGCGGAG GGCTGAGGGT GGCGCTGGCC
  S
  GGAGGGCGGG CGTGAGGGGC CAGGGGGGGT GGAGCTGGGG GTTCGGGGGT GTACCCAGGG
  GCGGGAGGCT GGACCGGGAC TGCTCTAAAT TGGCTGGAGA GGGGGCCCCG TCGGCGGCGA
  AGTTGCTAGC TGGGGGCAGA GACGGCCACG CGGTTGCAGG AGTAAGACCC CCCCCCCCTC
  TCGTGGAGTG GCTGAGACGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404780376	MGP_WTSI_X_139116321	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221934409					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404780376	MGP_WTSI_X_139116321	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141464774 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22978	CpG island 22978	within coordinates
Rr694098	regulatory region 694098	1597 bp distal
Rr694099	regulatory region 694099	1239 bp distal
Rr694100	regulatory region 694100	42 bp distal
Tmem164	transmembrane protein 164	within coordinates
Tssr162238	transcription start site region 162238	937 bp downstream
Tssr162239	transcription start site region 162239	339 bp downstream
Tssr162240	transcription start site region 162240	73 bp upstream
Tssr162241	transcription start site region 162241	105 bp upstream