rs221936177 SNP Detail

Summary

• ID
  rs221936177
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35964181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGTATATC ACCTCCACCT CCGCCGGCTA
  GGCGGCCTCT CTTCTGTCCT TTTCGGCCTT GGGGAGTCTC GGACTGCCTC TCCGCGTGTG
  CCTAGCTGCG TGCAAAGCCG GGGACGCGCG GGGGGGGGGG GTGTTTGTTC CTCAGCTGCA
  K
  GTCTGCAGGG GGCGGGCATC CCAGGCTCCT GCCACGCTGC TCTGGCCCCG AATTTACCCT
  CGAAGTCCCG CCCGAACCCC CTCCCTTTCG CATCCCTGGA GCCAGGGCTG AACCGCCGCG
  AGAGGAATGT GTTAATTTTC TTACTGGGGG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325584013	CHEV_18_35990782	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221936177					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35964181 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9844	CpG island 9844	within coordinates
Cpgi9845	CpG island 9845	170 bp proximal
Cpgi9846	CpG island 9846	505 bp proximal
Cxxc5	CXXC finger 5	within coordinates
Gm29417	predicted gene 29417	35 bp upstream
Gm50371	predicted gene, 50371	within coordinates
Rr352723	regulatory region 352723	within coordinates
Rr370361	regulatory region 370361	1022 bp upstream
Tssr150568	transcription start site region 150568	1372 bp downstream
Tssr150569	transcription start site region 150569	1333 bp downstream
Tssr150570	transcription start site region 150570	1307 bp downstream
Tssr150571	transcription start site region 150571	1289 bp downstream
Tssr150572	transcription start site region 150572	1277 bp downstream
Tssr150573	transcription start site region 150573	1017 bp downstream
Tssr150574	transcription start site region 150574	920 bp downstream
Tssr150575	transcription start site region 150575	765 bp downstream
Tssr150576	transcription start site region 150576	155 bp downstream
Tssr152918	transcription start site region 152918	991 bp upstream