rs221950859 SNP Detail

Summary

• ID
  rs221950859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:8476429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCATTA CTGGAAAAGT
  TCATTCAGCA AGTATTTATT GGTGACCTAA TGCATGCCGG GCACTGGGAT TCAGAGAGGG
  TGTGGAAAGG ACTTCGGTTA CTACTTAATT ATGCTGTCAA AGCAAAAGCT ACAGGGATTT
  TTAGATTTTC TGAAATACAG GTTCTGTGAA ACATGAGGGA AGCCTCGTGT TGGTATTTTG
  Y
  TCACCGTTGG GGTTGACGTC TCTTTAGATT TACTTAGCTT ACTGAAAGGC ATTTTGGAAA
  AGTACAAATG TAAGAAATTT TATTTCCCAG TAGCTGGAGA GTAGATCTTA GAATTTAATA
  TAGCAGTGGG CTGGAAGCTG TACAGTAAAG ACTTTATTTA GTTCTGTTTC TTTTCTTTAC
  ATGTACAGAA TTTTTAGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392965673	MGP_WTSI_15_8396945	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221950859					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392965673	MGP_WTSI_15_8396945	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8476429 () rs orientation: forward

Symbol	Name	Function Class
AW557046	expressed sequence AW557046	1082 bp downstream
Cpgi6933	CpG island 6933	1291 bp distal
Cpgi6934	CpG island 6934	725 bp distal
Gm63261	predicted gene, 63261	277 bp downstream
Rr369900	regulatory region 369900	963 bp downstream
Rr499035	regulatory region 499035	1609 bp distal
Rr499036	regulatory region 499036	within coordinates
Rr499037	regulatory region 499037	1470 bp distal
Rr499038	regulatory region 499038	388 bp distal
Tssr130593	transcription start site region 130593	1972 bp downstream
Tssr130594	transcription start site region 130594	1525 bp downstream
Tssr130595	transcription start site region 130595	1375 bp downstream
Tssr130596	transcription start site region 130596	751 bp downstream