rs221952059 SNP Detail

Summary

• ID
  rs221952059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:119724601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAATAAAG TTTTATTTAT
  AGCACCACTG GGGAACATCA AGGGCACAAT GTCAAGGAAT GTGGGAAAAC ACTCTGAATT
  GGTATTGATG GGATAATCCA AAGTCAGGCA TACAAACAGG CATACCACAG GAAGAGCTTC
  CATGGACAAA GACAACAGGG AAGGAGGTGG GATTTTTTTC TTCGGCCCCT ACAACCTGTG
  Y
  ATCCTTTGCA GCTTCCCAGT GTCTGGTTCC TCCGCAAACA GATTCTTCTC TGAATAAATT
  TGATCAGGTA CTCAGCCTAA CCTCTCTTGC TCCGCATTTT GCCTCTTCAC GTACACAAAG
  CTCAGTTGGA AGAGAGTTCA ATGTCGGCCT CTTCTCTATG GGTCAGGCAT TGTTGAGCAT
  CCTCCCTGTT CTGCTGGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384932095	MGP_WTSI_11_119695089	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221952059					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384932095	MGP_WTSI_11_119695089	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:119724601 () rs orientation: forward

Symbol	Name	Function Class
Rptor	regulatory associated protein of MTOR, complex 1	within coordinates
Rptoros	regulatory associated protein of MTOR, complex 1, opposite strand	within coordinates
Rr239371	regulatory region 239371	801 bp distal
Rr246287	regulatory region 246287	199 bp proximal
Rr249008	regulatory region 249008	1801 bp distal
Rr369474	regulatory region 369474	522 bp upstream
Tssr106251	transcription start site region 106251	1803 bp upstream
Tssr112235	transcription start site region 112235	572 bp downstream
Tssr112236	transcription start site region 112236	633 bp downstream
Tssr112237	transcription start site region 112237	686 bp downstream