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rs221957656 SNP Detail
Summary
  • ID
    rs221957656
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr8:85431199 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCAGATGAGG AAACGCCCTG
    TAGCTCTGGA AGGGTGACCG GCGACGCCAG GGATCCCCAG ACTTTTAAGA AAAATCTCCC
    ACAGGCTACT TGCAGTGGCT TTGCCAGTGT CCTCTTGCCA GGGCCGAGGC CAGAGAATCG
    ACAAGGCCAA GTAGCCATGG GATCCCAGAG GTCCTGAGGG AGGTAGGGAA GGGTCTGGAA
    R
    CCTCCGCGCT TCTCATCGGC GCCCCCTGCT GGAGGCGGGA AGACCCTAGA CAAGTGTGTG
    GGAGGACCTA CCCCATGAAG CCCAACTGGT TGCGCTTGAT CCATGATCCT GTTAACCGCG
    ACAACGAAGA CTCAGGCACT CTTGCATTTG TTTTTCTTTA TTTCTTTATT TCACATACAC
    ATTAGCCATT CAATGGAGAA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss375404554 MGP_WTSI_8_87228469 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221957656 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss375404554 MGP_WTSI_8_87228469 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr8:85431199 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi20708 CpG island 20708 within coordinates
Cpgi20709 CpG island 20709 493 bp proximal
Lyl1 lymphoblastomic leukemia 1 within coordinates
Nfix nuclear factor I/X 142 bp downstream
Rr187001 regulatory region 187001 within coordinates
Rr368567 regulatory region 368567 within coordinates
Tssr78439 transcription start site region 78439 1155 bp downstream
Tssr82117 transcription start site region 82117 556 bp downstream
Tssr82118 transcription start site region 82118 592 bp downstream
Tssr82119 transcription start site region 82119 620 bp downstream
Tssr82120 transcription start site region 82120 697 bp downstream
Tssr82121 transcription start site region 82121 1244 bp downstream
Tssr82122 transcription start site region 82122 1479 bp downstream
Tssr82123 transcription start site region 82123 1628 bp downstream
Tssr82124 transcription start site region 82124 1657 bp downstream
Tssr82125 transcription start site region 82125 1741 bp downstream
Tssr82126 transcription start site region 82126 1930 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory