rs221968081 SNP Detail

Summary

• ID
  rs221968081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72307022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCCAGGA TAACTCAAGG
  CCAAGGTGAT GCGCCCGCCG GCGCGCACGG AGTTGCCAGC GTTCCCGGAA CCTGCGGCAC
  GGGCGCTCAT GCTCCACGTG CGCGCGGAGG CCTGGGACTC GCCGCTGGCC ATCCTGTCTG
  GCGGTCGTAT CCCAGCCTTC CACCTTCTGG GACCTCACCC TGCACGACCC GCTGGCGGCG
  R
  GTGCGTTGTT ACCTACGCGT GCACTAGTGG CCCTGGGATC GATCCTCTTT TGCTCTGCGT
  CCCCTTCTAA CCACTCTGGA TCTGCGGGTT TAGCGTAGAT GGCCTTGTGA GCATTTCTTG
  AGAACTTGGG TTGTGCACGT GGGGGGAGGT ATTGTTTTAG TCCTAGGCTG TGGTCAGATG
  CAATTTTGGG GCCCAGCGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342588	CHEV_2_72314735	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221968081					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72307022 () rs orientation: forward

Symbol	Name	Function Class
Cdca7	cell division cycle associated 7	within coordinates
Cpgi11756	CpG island 11756	within coordinates
Rr397036	regulatory region 397036	612 bp downstream
Tssr18351	transcription start site region 18351	678 bp downstream
Tssr18352	transcription start site region 18352	466 bp downstream
Tssr18353	transcription start site region 18353	454 bp downstream
Tssr18354	transcription start site region 18354	419 bp downstream