rs221969249 SNP Detail

Summary

• ID
  rs221969249
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87842998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATATGGA AAGGCCTGGG
  GCTGTGACTG GATGCTGGAG TGAACTTTAG CCTGGAGCAC ATCCTAGGAA GAAAAGAACC
  GTTAGTCCAC ACTTCAGCAA AGTCGACATT CTTTATTGAT TAATTAATAA TCCTTTACCC
  AATGATAAGC AAAGGAATGA ACAACTACAA AAACCTTCAT TTGCTTAAAA ATCTACCATG
  W
  CCTAGGTGAA TACAGTAATT AATGGCTTTA AATCTAGCAG GTTGAAGTCT GATGCAGAAG
  AATTACTATA ACTTTGAGAA CACCCTGAAA TAAAAGGTAA ATTCTAGGCA ATCCTGGGGT
  ACAGATTAAG GCCCTTTTTT TTTAAAGATA CACAAAGCAA GAAAGCATTG TCTAGGGTAA
  CATGAAGAAA ATAAGTGTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777294	MGP_WTSI_5_88124164	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221969249					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777294	MGP_WTSI_5_88124164	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87842998 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	1161 bp distal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	1121 bp distal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	964 bp distal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	1276 bp distal
Tssr1529	transcription start site region 1529	578 bp downstream
Tssr46883	transcription start site region 46883	628 bp downstream
Tssr46884	transcription start site region 46884	613 bp downstream
Tssr46885	transcription start site region 46885	592 bp downstream
Tssr46886	transcription start site region 46886	562 bp downstream
Tssr46887	transcription start site region 46887	545 bp downstream
Tssr46888	transcription start site region 46888	439 bp downstream
Tssr46889	transcription start site region 46889	420 bp downstream
Tssr46890	transcription start site region 46890	387 bp downstream
Tssr46891	transcription start site region 46891	374 bp downstream
Tssr46892	transcription start site region 46892	345 bp downstream
Tssr46893	transcription start site region 46893	319 bp downstream
Tssr46894	transcription start site region 46894	274 bp downstream
Tssr46895	transcription start site region 46895	254 bp downstream
Tssr46896	transcription start site region 46896	175 bp downstream
Tssr51618	transcription start site region 51618	599 bp upstream
Tssr51619	transcription start site region 51619	565 bp upstream
Tssr51620	transcription start site region 51620	555 bp upstream
Tssr51621	transcription start site region 51621	536 bp upstream
Tssr51622	transcription start site region 51622	500 bp upstream
Tssr51623	transcription start site region 51623	484 bp upstream
Tssr51624	transcription start site region 51624	467 bp upstream
Tssr51625	transcription start site region 51625	457 bp upstream
Tssr51626	transcription start site region 51626	445 bp upstream
Tssr51627	transcription start site region 51627	419 bp upstream
Tssr51628	transcription start site region 51628	309 bp upstream
Tssr51629	transcription start site region 51629	215 bp upstream
Tssr51630	transcription start site region 51630	167 bp upstream
Tssr51631	transcription start site region 51631	128 bp upstream
Tssr51632	transcription start site region 51632	129 bp downstream
Tssr51633	transcription start site region 51633	914 bp downstream
Tssr51634	transcription start site region 51634	1036 bp downstream
Tssr51635	transcription start site region 51635	2000 bp downstream