rs221973088 SNP Detail

Summary

• ID
  rs221973088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137177003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAATATAT ATTTTTATGT
  ATTCCGATAT CTATACATAT ATATGTATCG AGATAGTCTG GGATAGACTG GAACTCATTA
  TGTAGCCTGG GTTGTCCTTA AGTTATCAAC TTTCTTGCCT CCACCTCCTG AGTGGATGGA
  TTACAGGCTC CAGCCACCAT GTTTAGCTTT AGTTAACATT TTTAAGCACT CAGGTTAGTA
  Y
  ATTACTGAAT ACACATAGAA GGCTCTTTCT CAATTTTGAG GGAGATTGCA AAGAATCCCT
  GACACTATGA AAGGCATACT TTATACAAAA TATAATGTGT AACACATAAT AGGACAAGAT
  TGTACCACAA GGTGAAAGCC TGTGTTGAGC CAAGAGCATC AAAACCAGAG GGAGGACTGA
  GCAGGCGCAA AGGAGGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366873370	MGP_WTSI_5_137624026	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221973088					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366873370	MGP_WTSI_5_137624026	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137177003 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	1104 bp downstream
Tssr49309	transcription start site region 49309	1623 bp upstream
Tssr49310	transcription start site region 49310	1983 bp upstream
Tssr49311	transcription start site region 49311	1997 bp upstream
Tssr53917	transcription start site region 53917	1449 bp upstream
Tssr53918	transcription start site region 53918	1389 bp upstream
Tssr53919	transcription start site region 53919	1483 bp downstream
Tssr53920	transcription start site region 53920	1499 bp downstream
Tssr53921	transcription start site region 53921	1654 bp downstream
Tssr53922	transcription start site region 53922	1695 bp downstream
Tssr53923	transcription start site region 53923	1736 bp downstream
Tssr53924	transcription start site region 53924	1750 bp downstream
Tssr53925	transcription start site region 53925	1788 bp downstream
Tssr53926	transcription start site region 53926	1819 bp downstream
Tssr53927	transcription start site region 53927	1968 bp downstream
Tssr53928	transcription start site region 53928	1986 bp downstream