rs221982340 SNP Detail

Summary

• ID
  rs221982340
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42202664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCC AGAAAAGCGG GGTAGGGGGG
  G
  GTGGGGGGGT GGGGGGGGCA GCGCA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324326987	CHEV_13_42144557	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221982340					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42202664 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5502	CpG island 5502	231 bp proximal
Gm28707	predicted gene 28707	within coordinates
Gm61288	predicted gene, 61288	within coordinates
Gm61314	predicted gene, 61314	1525 bp downstream
Rr478102	regulatory region 478102	within coordinates
Rr478103	regulatory region 478103	796 bp proximal
Tssr119424	transcription start site region 119424	179 bp upstream
Tssr119425	transcription start site region 119425	407 bp upstream