rs221985334 SNP Detail

Summary

• ID
  rs221985334
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:146439928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTATTCT CATTTGGAAA
  CCCAGTGTTC CATAGTCAGA GTTTCCTAGC TTATTTGAAT ACAAACAGAA CATTTCCTGG
  CCAGCTCATT AACACCCTGC CAAACAAGTT TCTCTCCACC CAAGTTAGGG AACTGTAGAT
  AAATGCATTG ACGTTTTCTT TCTTTTCTTA AATCCATTAA CTTTCTGATG TTTTAATGTA
  Y
  TATTCCCTTT TACTTATTTA TTTTAATGTG ATTCCTGATA ATTAAAAAAA AAATTGTCTC
  ACTTTGCTGG TCCCTCTGTT CAATTCCTTG TTTGGGGGCA CAAGAACTTA GGACCCCTCT
  TAAGTTACTC ACTGAACTCC AATAAATTCT AATGGTGAAT AGCCCTTGCT CCTCCAGGAC
  TATTTGGGAT GGGGGCTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ
ss370482413	MGP_WTSI_6_146486952	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	SJL/J	SPRET/EiJ
rs221985334					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370482413	MGP_WTSI_6_146486952	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:146439928 () rs orientation: forward

Symbol	Name	Function Class
Rr134091	regulatory region 134091	673 bp proximal
Rr139420	regulatory region 139420	within coordinates
Rr400056	regulatory region 400056	within coordinates