rs221986503 SNP Detail

Summary

• ID
  rs221986503
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170470187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTC TCCAGCCCCT CAACATTTTT
  K
  TAAACTACAT ATATAGTATT ACTAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320111966	CHEV_1_172572749	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221986503					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170470187 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	1552 bp proximal
Olfml2b	olfactomedin-like 2B	1914 bp upstream
Rr14047	regulatory region 14047	within coordinates
Rr25614	regulatory region 25614	1983 bp distal
Rr28935	regulatory region 28935	1213 bp proximal
Tssr280	transcription start site region 280	1726 bp downstream
Tssr9927	transcription start site region 9927	222 bp upstream
Tssr9928	transcription start site region 9928	1831 bp upstream
Tssr9929	transcription start site region 9929	1872 bp upstream
Tssr9930	transcription start site region 9930	1905 bp upstream
Tssr9931	transcription start site region 9931	1954 bp upstream
Tssr9932	transcription start site region 9932	1971 bp upstream
Tssr14922	transcription start site region 14922	1710 bp downstream
Tssr14923	transcription start site region 14923	1761 bp downstream