rs221987409 SNP Detail

Summary

• ID
  rs221987409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128513287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGCAAGA AAAGAAAGGC
  CTTTACCTTG ACCTGAACTG CCAGGACAGG GCTGGGACCT AAGTGGGAAG AGAAAGAGAA
  AGAAAGGAGC TTTGTGGTCA CCTCAAACTA TGAAGCAAAG CACTGGACAC AGATCAACAT
  CTGTTCATGA TTTGAAAAAC TAACAGACTC AGAGAGAAGA AAATCCTGTT AACATCAAAT
  R
  ACATAGCTTG CCAAGACCTA TAAAAGAGTA TCGTTCTCAG CACCTCTGAC TTACAGCCGG
  GAAGGAGACA ACTGCATTTC TGCTGAGTGT TAGAATGGAG GCGGGAGAAT GGCCAAACTG
  ACAGGAACGG CAAAATTAAA GGTACTAAAG GAGAAACACA ACGGCCACAA GGGCAGGACG
  CTGGGATGCC TGCATGGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321305849	CHEV_4_128296738	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221987409					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128513287 () rs orientation: forward

Symbol	Name	Function Class
Tlr12	toll-like receptor 12	875 bp upstream
Tssr43437	transcription start site region 43437	1167 bp upstream
Tssr43438	transcription start site region 43438	897 bp upstream
Tssr43439	transcription start site region 43439	869 bp upstream
Tssr43440	transcription start site region 43440	848 bp upstream