rs221989480 SNP Detail

Summary

• ID
  rs221989480
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129228109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGAGCTG GCTCAGCGGC
  TAAGAGCATT GACTGCTCTT CCCAAGGTCC TGAGTTCAAA TCCCAGCAAC CACATGGTGG
  CTCACAACAA TCTGTAATGG GACCCAATGC CCTCTTCTGG CTTCAGTGTA TTCATACAAA
  TAGAGATGAC TTAAAAAAAA AAAGTAAAAG AAAAAGAAAA AAAAAAATCA AACAACAACA
  M
  AACAACAGAG CATGTTTTCT TTGCAGGGTA AATTACAAAA TGATCTTCTG TTTTTGACAT
  TATTTCTAGT CGAGGAAAAT AAATAGTACT CATAAGCTCT GATAATGTCC CCCCTGAGTG
  ACTGGAGGGC AAAAAAATTA AAATATATGA ACTATCAAAA ATATTCAAGA TTCGCGTCAC
  CTGGTCACAT CTGGAAGCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312032	CHEV_4_129011560	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221989480					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129228109 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14889	CpG island 14889	290 bp proximal
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	within coordinates
Rr367701	regulatory region 367701	1043 bp upstream
Rr367702	regulatory region 367702	1491 bp upstream
Rr600200	regulatory region 600200	1005 bp proximal
Rr600201	regulatory region 600201	1044 bp proximal
Tssr39141	transcription start site region 39141	1277 bp upstream
Tssr39142	transcription start site region 39142	1646 bp upstream
Tssr39143	transcription start site region 39143	1700 bp upstream
Tssr43492	transcription start site region 43492	927 bp downstream
Tssr43493	transcription start site region 43493	981 bp downstream
Tssr43494	transcription start site region 43494	1008 bp downstream
Zbtb8os	zinc finger and BTB domain containing 8 opposite strand	1216 bp upstream