rs221998996 SNP Detail

Summary

• ID
  rs221998996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129227886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACTACTG CTGAAAACAC
  TCGCCCCCAC TTCAGTTAGG CAGACCCCAG ATTTATCTTG CTATTTATTA ACCTTATAAA
  TGACTTGAGA AATCAAATGT TTTGTTGAAT AAACTGGACC CAGAATAACT TTTGAAAACG
  GTCAAGTTTT ATATTACATG GCCAACTCCA GTCTTAAGAA TGGCTATTCA ACTCCATGCT
  R
  AGGGAAAAAA CAAAAACAGG GCTGGAGAGC TGGCTCAGCG GCTAAGAGCA TTGACTGCTC
  TTCCCAAGGT CCTGAGTTCA AATCCCAGCA ACCACATGGT GGCTCACAAC AATCTGTAAT
  GGGACCCAAT GCCCTCTTCT GGCTTCAGTG TATTCATACA AATAGAGATG ACTTAAAAAA
  AAAAAGTAAA AGAAAAAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312029	CHEV_4_129011337	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221998996					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129227886 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor			Intron
				Noncoding-Transcript-Variant
Rr367701	regulatory region 367701			1266 bp upstream
Rr367702	regulatory region 367702			1714 bp upstream
Rr600200	regulatory region 600200			1228 bp proximal
Rr600201	regulatory region 600201			1267 bp proximal
Tssr39141	transcription start site region 39141			1500 bp upstream
Tssr39142	transcription start site region 39142			1869 bp upstream
Tssr39143	transcription start site region 39143			1923 bp upstream
Tssr43492	transcription start site region 43492			1150 bp downstream
Tssr43493	transcription start site region 43493			1204 bp downstream
Tssr43494	transcription start site region 43494			1231 bp downstream
Zbtb8os	zinc finger and BTB domain containing 8 opposite strand			1439 bp upstream