rs222010064 SNP Detail

Summary

• ID
  rs222010064
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53216052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATGCCTA TTAATTCCCC
  ATCGACCGTT TCACTTTCTG CAGCTCTCAC TGTAAATAAT TATTTTAGTA CAATCACTCA
  CAGACAGTTT CTCTGAAGAA AAATGTATTC AAGCTACGCA GCTTAACAGT TTTATTGTGG
  AACCTGTTGA TACTCTAAAC AAGTACAGCT AGTGGTTTAA ATAGCTTTGT AGGAGCCGGA
  Y
  GGTGATGGTA CATCCAAGCA TTCAGGAGGC AGAGGTAAGC AGATTTCAGA ATTCGGGGCC
  AGCCTGGTCT ACAGAGTGAG TTCCAGGACA GCCAAGGCTA CACAGAGAAA CCCTGTCTCT
  CTAAAAACAA AACAAAGTTA AGCTTTAAAG GGGATAAGAG GCTGTGGTGA GGAAAGGCAA
  AAGGCCCAGT TCAAGTCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323672287	CHEV_11_53138727	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222010064					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53216052 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2860	CpG island 2860	297 bp distal
Gm74485	predicted gene, 74485	580 bp upstream
Rr447001	regulatory region 447001	591 bp distal
Rr447002	regulatory region 447002	536 bp distal
Rr447003	regulatory region 447003	98 bp distal
Tssr101382	transcription start site region 101382	521 bp downstream
Tssr107917	transcription start site region 107917	613 bp upstream
Zcchc10	zinc finger, CCHC domain containing 10	within coordinates