rs222010671 SNP Detail

Summary

• ID
  rs222010671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21422621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCAAGCTA AAAGATTCTA
  AGACACTTGC TAAGTTCCCT ATCATCAAAA CTATTTGACA CTTTGTTACT GATTAACTGA
  AATGTCTTAG CCACTTTTGC AAGCTAAAGG ATCCTAGGAT AGCGAGTAAA TTGCCTATCG
  CCAATTTCAA TTCAAAACTT CTAAAGCATG CCTTTCCTTA AAATCCAATC TCTAAAAAAA
  Y
  TAAAGTAGAA ACCCTAAGTT TCTAGGCAAT TTAAATGGGT TATCCCTGGT GATCTGTTAA
  AAATTGCAAG GAAAACATTC ATCTTGACAA GCCAATTCAA GAATTGGCTT GGAAGTTTGA
  GCCTCGCTCT CTCAGCTAAG CACCTCTCCA ACAAGACGGA TGATCTCGAA ATCCAATGCA
  AGATTCCAAA TACAGTCGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385303684	MGP_WTSI_12_21378481	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	C	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222010671					SNP	T	T	T	C	C	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385303684	MGP_WTSI_12_21378481	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21422621 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	within coordinates
Cpgi4477	CpG island 4477	567 bp proximal
Gm49586	predicted gene, 49586	1053 bp upstream
Tssr112932	transcription start site region 112932	1070 bp upstream
Tssr112933	transcription start site region 112933	1632 bp upstream
Tssr115856	transcription start site region 115856	861 bp downstream
Tssr115857	transcription start site region 115857	881 bp downstream
Tssr115858	transcription start site region 115858	906 bp downstream
Tssr115859	transcription start site region 115859	930 bp downstream
Tssr115860	transcription start site region 115860	986 bp downstream