rs222016688 SNP Detail

Summary

• ID
  rs222016688
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3425915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGC TCCCTTTAAC CCCCCCCCCC
  M
  CACACACACA CAAATGTTTC TCACA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320204512	CHEV_2_3342150	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222016688					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3425915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11152	CpG island 11152	464 bp distal
Dclre1c	DNA cross-link repair 1C	within coordinates
Rr367090	regulatory region 367090	723 bp downstream
Rr550902	regulatory region 550902	703 bp distal
Rr550903	regulatory region 550903	410 bp distal
Tssr15890	transcription start site region 15890	671 bp downstream
Tssr22367	transcription start site region 22367	854 bp upstream