rs222018378 SNP Detail

Summary

• ID
  rs222018378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:25110591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGAGCAA GTTCCAGGAC
  AGCCAGGGCT ACACAGAAAG ACCTTGTGTG TCTGCAAGTG TAGCTGGCAA CATACACACA
  AGTGTACACA CAGCCCAGCC AAGATCCACT TCCCAGACCT TCCCAACCTC TCCTGGAAAA
  GTCAAAGATT TTCTCAGAAA AACAAACAAA CAAAAAATAG AGGCATGGCT GTAATTCAGT
  R
  ACACACTGCT TGGTTAGCAT GCATGGGCAC CCCCCTCCCC CATACACACA CACTAGCAAC
  AACAAGAAAA AACCAACACT ATCATACCTT GGCATATGAG TCATAGAAGT GAATCATTTT
  GAACTTAGAA ACCTGAGCCC TTAGCTAATA TTGATTGTTA TGTGGGATAG TGTGAAGATT
  ATGGGAACAA TGCATCAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370805183	MGP_WTSI_7_26196185	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222018378					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370805183	MGP_WTSI_7_26196185	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25110591 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	Intron
Rr643765	regulatory region 643765	1486 bp distal
Rr643766	regulatory region 643766	1857 bp distal
Rr643767	regulatory region 643767	1584 bp distal
Rr643768	regulatory region 643768	within coordinates
Rr643769	regulatory region 643769	1910 bp proximal
Tssr2143	transcription start site region 2143	1631 bp downstream
Tssr2144	transcription start site region 2144	1781 bp downstream
Tssr2145	transcription start site region 2145	1799 bp downstream
Tssr2146	transcription start site region 2146	1817 bp downstream
Tssr2147	transcription start site region 2147	1860 bp downstream
Tssr71243	transcription start site region 71243	1641 bp downstream
Tssr71244	transcription start site region 71244	1666 bp downstream
Tssr71245	transcription start site region 71245	1679 bp downstream
Tssr71246	transcription start site region 71246	1691 bp downstream
Tssr71247	transcription start site region 71247	1736 bp downstream