rs222021396 SNP Detail

Summary

• ID
  rs222021396
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58158541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATCTGAT TCCCTCTTCT
  GGTGTGTCTG AAAACAGCTA CAGTGTACTC ATATAAATAT TTTGAGTAAA TATTTTAAAA
  AATTAGGCCA AGATCAGTTA TATTGTGTAC AAATATTTGT GTTTTCTTTC CTCAATTTTT
  TAAATTATGT GATGTAACAT CTATTAATAG AATGTCAATG GTTATCATAT TGAAGTCTGA
  R
  ATACTAATAG AATGTTTCTA GGGGGCTGGT GAGATGGCTC AGGGGTTAAG AGCACTGACT
  GCTCTTCCAG AGGTCCTGAG CTCAATTCCC AGCAACCACA TGGTGGCTAC AACCATCTGT
  AATGGGATCT GATGCCCTCT TCTGGTGTGT CTGAAGACAT CGACAGTGTA CTCACATACA
  TGAAATAAAT TAATTAATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377705021	MGP_WTSI_9_58099065	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222021396					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377705021	MGP_WTSI_9_58099065	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58158541 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21845	CpG island 21845	1760 bp proximal
Pml	promyelocytic leukemia	1472 bp upstream
Rr401408	regulatory region 401408	1694 bp upstream
Rr679902	regulatory region 679902	982 bp distal
Rr679903	regulatory region 679903	1119 bp distal
Rr679904	regulatory region 679904	174 bp distal
Rr679905	regulatory region 679905	129 bp proximal
Rr679906	regulatory region 679906	1450 bp proximal
Stoml1	stomatin-like 1	1906 bp upstream
Tssr85378	transcription start site region 85378	1917 bp upstream
Tssr89890	transcription start site region 89890	1618 bp upstream
Tssr89891	transcription start site region 89891	1586 bp upstream
Tssr89892	transcription start site region 89892	1467 bp upstream