rs222031173 SNP Detail

Summary

• ID
  rs222031173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113616199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aggccagcc tggtctacag agtgagttcc
  aggacagcca gggctaaaca gagaaaccct gtctcaaaag accaaaataa ataaataaat
  aaaataaaat aaaataaaat aGTGTCAAAG AATGTACCTT CCCTACCTTA GTGTCGTCAT
  Y
  CTGTGGCATA TTTTCCATtc ttattatttt gagacagggt cacccagtgt agccctggta
  cttgctttgt agatcaggct ggcctggaac taacagagct ctacctgcct ctcctgctgg
  aatactgagt taaaggtgta gtccaccatt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911252	CHEV_6_113589232	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222031173					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113616199 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17852	CpG island 17852	468 bp distal
Gm43964	predicted gene, 43964	1324 bp downstream
Irak2	interleukin-1 receptor-associated kinase 2	within coordinates
Rr399834	regulatory region 399834	661 bp downstream
Rr636556	regulatory region 636556	700 bp distal
Rr636557	regulatory region 636557	848 bp distal
Rr636558	regulatory region 636558	782 bp distal
Rr636559	regulatory region 636559	within coordinates
Tssr58237	transcription start site region 58237	694 bp downstream
Tssr62463	transcription start site region 62463	125 bp downstream