rs222032290 SNP Detail

Summary

• ID
  rs222032290
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:121421638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTTCCAG TAAGCTAGAA
  CTCTGATCTT CCAAGTTAGG GTCCTGGGAA ATGCCCAAGA GTCCAAGGTT CGACAATCTC
  TTACACAGTA CTTATACTTA GAATTTTATC ACCTATGTAA TTTAGATAAG AAATTGTACA
  GCCATCTGTC TATTTGAAGT AAGCAAAAAA GGAACCCTTT TCGAAAACAA CAAATGCACT
  K
  ACCACTTAAC TACGTACGCT CCATTCAAGG GGCGATAAAC CCAAATATGT AACGGGAAAC
  CTTCCCTAAT TGATGCTGCA CTGCTGTTAA ATAACTGTAA AGGACAGATT CATCACCAAG
  TGCGCATATG TCTCTAGTGG GTAGCTGAAA ACATATTTAT CAGCTAAGAT ATATAAGATA
  AGCTCTCTCT CTATACCAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323513547	CHEV_10_121022789	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222032290					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121421638 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	514 bp proximal
Rr402304	regulatory region 402304	139 bp upstream
Rr402305	regulatory region 402305	993 bp upstream
Rr440247	regulatory region 440247	within coordinates
Rr440248	regulatory region 440248	1044 bp proximal
Tbk1	TANK-binding kinase 1	Intron
Tssr96043	transcription start site region 96043	484 bp upstream
Tssr96044	transcription start site region 96044	520 bp upstream
Tssr99623	transcription start site region 99623	140 bp downstream
Tssr99624	transcription start site region 99624	168 bp downstream
Tssr99625	transcription start site region 99625	189 bp downstream
Tssr99626	transcription start site region 99626	977 bp downstream
Tssr99627	transcription start site region 99627	997 bp downstream
Tssr99628	transcription start site region 99628	1080 bp downstream
Tssr99629	transcription start site region 99629	1108 bp downstream
Tssr99630	transcription start site region 99630	1136 bp downstream
Xpot	exportin, tRNA (nuclear export receptor for tRNAs)	1647 bp downstream