rs222044453 SNP Detail

Summary

• ID
  rs222044453
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:46856849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGTTATC CAGGCAGGAG
  TCATGTCAGG GTGCACGGAC AGGAGGCAAG CAGAAGAAAG GAGGAGTCAT ATAAGATGTG
  AACTTCTGTG TGGATGGGAT TCACTTAGCA TGGAAGGAAG GCTAGGCGAT AACCATTGAT
  GCTCTTATAG CTGTTGACAA ACATGGGGCC AAGCCAAACC ATCTTCTAGG CCTGGGGGGC
  R
  GGGATGGCAT AGGGAGGGCC TAAACCAGAA GCTCTAAATA GGGGTGTGAA GGTGACGCCT
  GACTGCCGGG ACTGAGAACA GAAAGCAGCA CGATCGCGTC CAAGCTAGAC TCCAGAGAGG
  TGGCGGAGGA GCCCGCTCAA CACCAAGCGG GGAATAATGG CCTGGGGGAG CGGGGCGGCG
  CGGGGTGAGC ATGGCGGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325404789	CHEV_17_46682872	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222044453					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46856849 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi9232	CpG island 9232			34 bp proximal
Cul9	cullin 9			Intron
				mRNA-UTR
Rr527757	regulatory region 527757			within coordinates
Rr527758	regulatory region 527758			455 bp proximal
Rr527759	regulatory region 527759			1001 bp proximal
Tssr148330	transcription start site region 148330			352 bp downstream