rs222060928 SNP Detail

Summary

• ID
  rs222060928
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:165483223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTGTGG GGCTTTCTCC
  CTGACCACTC CCTCCTCCTC AGGCATATTT GCGTCTGGGC TTTTCTGTCC GAGCCTATCT
  TCATCTGCTA CCCTCTCCTC AGAGGCTGTC CCTTCAGTGG CCTTCCCAGT GTCTGTATGC
  TCTCCCGGGG TTGTCTCTTC CCGTGGGCTT CCGCACCCAT TCTCAGCCTC TGGGCTGCCG
  R
  TTTGCGATGG CGCCTGGACC TCTGGATGAC CCTGACTAGC TGTGTCTGGA TTCTGTCCAA
  CCTTCTCTCC AGCATTCGCC TCCTCTGGGG TCCTGACCAG CTCCTCTGGC TTCTCTGTGC
  TGTTACACGT GTTCCTTCTC CGTGGCTTTT CTGCAGACCA CGGAGTTCCC TCCACCCCGT
  CTGCCATAGC CTCCTGGTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320087014	CHEV_1_167585785	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222060928					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165483223 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	Coding-NonSynonymous
Rr372388	regulatory region 372388	678 bp upstream
Rr422410	regulatory region 422410	1594 bp distal
Rr422411	regulatory region 422411	1837 bp distal
Rr422412	regulatory region 422412	245 bp distal
Tssr9810	transcription start site region 9810	1768 bp downstream
Tssr9811	transcription start site region 9811	368 bp downstream
Tssr9812	transcription start site region 9812	115 bp downstream