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rs222062194 SNP Detail
Summary
  • ID
    rs222062194
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr1:149982021 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAAAATGTAT GAATATGTGA
GTGTTGTTAC AAGATGAAAA ATGCTGCAGG TATCAACACT GTTGGTTACA ACTGTGTCTT
CTTTACTATG ATAGGAGCAT GTAATGTGGA ATTCTTCTTA AATCTTGCAT ATCTTTATCT
CATCAAACAA AGGGGTCCAA GTTCAGTTTT AAATAAGCAT TTAAGGCAGA TACTGACAAC
W
ATCTCATTTT TTAAAATGTT GTCTTGAGAC AAATAATTTG AAATTTCTAA ATTGGGAGTT
TGAATCACTT TTGAAAGCTC TTACTTTCTT AAGCTGTCAG GTTTGTACCG ACATGGAGTA
AACAGCTATC ATAAACGTAA ATCTCCAAAA CTAGTAGAAA TTATGTCATG ATTGATGGTT
AAGATACCAT GTCAGGGATT                                            

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss351888773 MGP_WTSI_1_151953400 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222062194 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss351888773 MGP_WTSI_1_151953400 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149982021 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ptgs2 prostaglandin-endoperoxide synthase 2 within coordinates
Rr12935 regulatory region 12935 1621 bp distal
Rr24983 regulatory region 24983 1725 bp distal
Tssr9256 transcription start site region 9256 1983 bp downstream
Tssr9257 transcription start site region 9257 1949 bp downstream
Tssr9258 transcription start site region 9258 1933 bp downstream
Tssr9259 transcription start site region 9259 1876 bp downstream
Tssr9260 transcription start site region 9260 1824 bp downstream
Tssr9261 transcription start site region 9261 1805 bp downstream
Tssr9262 transcription start site region 9262 1784 bp downstream
Tssr9263 transcription start site region 9263 1772 bp downstream
Tssr9264 transcription start site region 9264 1723 bp downstream
Tssr9265 transcription start site region 9265 1696 bp downstream
Tssr9266 transcription start site region 9266 1607 bp downstream
Tssr9267 transcription start site region 9267 1272 bp downstream
Tssr9268 transcription start site region 9268 1202 bp downstream
Tssr9269 transcription start site region 9269 865 bp downstream
Tssr9270 transcription start site region 9270 834 bp downstream
Tssr9271 transcription start site region 9271 811 bp downstream
Tssr9272 transcription start site region 9272 780 bp downstream
Tssr9273 transcription start site region 9273 736 bp downstream
Tssr9274 transcription start site region 9274 716 bp downstream
Tssr9275 transcription start site region 9275 684 bp downstream
Tssr9276 transcription start site region 9276 670 bp downstream
Tssr9277 transcription start site region 9277 614 bp downstream
Tssr9278 transcription start site region 9278 593 bp downstream
Tssr9279 transcription start site region 9279 575 bp downstream
Tssr9280 transcription start site region 9280 475 bp downstream
Tssr9281 transcription start site region 9281 455 bp downstream
Tssr9282 transcription start site region 9282 421 bp downstream
Tssr9283 transcription start site region 9283 406 bp downstream
Tssr9284 transcription start site region 9284 394 bp downstream
Tssr9285 transcription start site region 9285 380 bp downstream
Tssr9286 transcription start site region 9286 301 bp downstream
Tssr9287 transcription start site region 9287 206 bp upstream
Tssr9288 transcription start site region 9288 322 bp upstream
Tssr9289 transcription start site region 9289 339 bp upstream
Tssr9290 transcription start site region 9290 495 bp upstream
Tssr9291 transcription start site region 9291 541 bp upstream
Tssr9292 transcription start site region 9292 660 bp upstream
Tssr9293 transcription start site region 9293 689 bp upstream
Tssr9294 transcription start site region 9294 709 bp upstream
Tssr9295 transcription start site region 9295 725 bp upstream
Tssr9296 transcription start site region 9296 747 bp upstream
Tssr9297 transcription start site region 9297 756 bp upstream
Tssr9298 transcription start site region 9298 782 bp upstream
Tssr9299 transcription start site region 9299 804 bp upstream
Tssr9300 transcription start site region 9300 821 bp upstream
Tssr9301 transcription start site region 9301 955 bp upstream
Tssr9302 transcription start site region 9302 985 bp upstream
Tssr9303 transcription start site region 9303 1047 bp upstream
Tssr9304 transcription start site region 9304 1071 bp upstream
Tssr9305 transcription start site region 9305 1089 bp upstream
Tssr9306 transcription start site region 9306 1101 bp upstream
Tssr9307 transcription start site region 9307 1105 bp upstream
Tssr9308 transcription start site region 9308 1138 bp upstream
Tssr9309 transcription start site region 9309 1152 bp upstream
Tssr9310 transcription start site region 9310 1183 bp upstream
Tssr9311 transcription start site region 9311 1195 bp upstream
Tssr9312 transcription start site region 9312 1220 bp upstream
Tssr9313 transcription start site region 9313 1240 bp upstream
Tssr9314 transcription start site region 9314 1251 bp upstream
Tssr9315 transcription start site region 9315 1345 bp upstream
Tssr9316 transcription start site region 9316 1528 bp upstream
Tssr9317 transcription start site region 9317 1805 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory