rs222066663 SNP Detail

Summary

• ID
  rs222066663
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111503645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAATCTT TCAGTTCTGC
  ATCTTGTCTT TAGTCTCCCT CACGGACATG GTCAATTAGC TTTACAGAGC TTTTAAGTCA
  TGGGGAAATA ACCTTGGATT TGGGCAAAAT AAAATTGATC TTTCCATTTT AACCTTGTTA
  CAAATTCTAC TGGCGTAGAA CAAAGGGCAG CCCTTCTTCC ACAACACTGC TCTTTCTCCC
  S
  ATCCAGGAAA CCAGGCAGCT GCTGACTAAG CCAGGCTGCT GCTCTCAGAA GCCCTGGGAA
  GGTGGAACAG GTATTTCTAT ATTATTAGTT GGACTCTGGG ATGATTTCAA CTCTCAGTCG
  AAACTTTTAC CAAAAAAAGA AGTTTTTTTT TTCTTTTAAA TAATGGAAGA GTGTCTAGGA
  AAGAAAAAGT CCGGGCTCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387360250	MGP_WTSI_12_112775422	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222066663					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387360250	MGP_WTSI_12_112775422	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111503645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	236 bp proximal
Eif5	eukaryotic translation initiation factor 5	890 bp upstream
Gm56529	predicted gene, 56529	1643 bp upstream
Gm56546	predicted gene, 56546	within coordinates
Gm58608	predicted gene, 58608	805 bp upstream
Gm60631	predicted gene, 60631	1308 bp downstream
Rr403512	regulatory region 403512	616 bp upstream
Tssr115316	transcription start site region 115316	1551 bp downstream
Tssr115317	transcription start site region 115317	1165 bp downstream
Tssr115318	transcription start site region 115318	1100 bp downstream
Tssr115319	transcription start site region 115319	6 bp downstream
Tssr115320	transcription start site region 115320	938 bp upstream
Tssr115321	transcription start site region 115321	1053 bp upstream
Tssr115322	transcription start site region 115322	1120 bp upstream
Tssr115323	transcription start site region 115323	1258 bp upstream
Tssr115324	transcription start site region 115324	1574 bp upstream
Tssr115325	transcription start site region 115325	1608 bp upstream
Tssr117828	transcription start site region 117828	706 bp downstream
Tssr117829	transcription start site region 117829	1368 bp downstream