rs222070427 SNP Detail

Summary

• ID
  rs222070427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156079960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gctGGAATA TATGGTTGGT CCTGATTATT
  AAATCATGTT ATGAAATAAA TATATTTAGT GAAGCATTTG CTTCCACTTA ACTGTGGTGG
  TCTGTCtttt tttttttttt tttttttttt CTCTCCCTGA GACAATACTT CTCTGTGTAG
  Y
  CCTGGTTATC Acccaagtgc tgggattaaa ggttgatagt gagaatttgg aattttggtt
  gctttaaaaa tcacaaatat tataagggtg tgcttccatt ttaatcccag gcataaagat
  gtggggctgc tctggactct ccatggcagc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444412	CHEV_4_155369612	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222070427					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156079960 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15496	CpG island 15496	1666 bp distal
Rr100725	regulatory region 100725	959 bp distal
Rr377473	regulatory region 377473	1130 bp downstream
Sdf4	stromal cell derived factor 4	within coordinates
Tssr40753	transcription start site region 40753	836 bp upstream