rs222073178 SNP Detail

Summary

• ID
  rs222073178
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135389156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAACCCTA TTCTTATCTC
  ACCCTGGGTT TGGAACTAAT GCCTCTCTCT GGAAGGGCTG GGGGTGGGGG CATGGGAGTG
  AGGGATGCCA GTAGCCATGC AAACCACTTC AGGGCATTCC CCATTTTGGC CACTAGGGGG
  CAGGGCTACA TTGGAAAGGG TGCTGGATCC TGTGGGAACT CTGGATCTCT GAAGGGGGGG
  K
  GGGGGGGGAA GGTTCCCAGT GGTTGGACTC CAGCTAGCTC CTGGAAGCAA TGGGTATAGG
  AAAAGGTAAA GGGAATGGGG TACAGGAGCA GACAGGGGAC CACTCAAGGA TGGATAAACA
  GCCCCCATGA GAGCACTGCA GCAAATGGTC CTCTTGTTAC CCTCATAACA AGAGGAGGAA
  GGCTTTGGGT AGGTCACTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	LP/J	PWK/PhJ	SEA/GnJ	SPRET/EiJ
ss351541735	MGP_WTSI_1_137357995	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	LP/J	PWK/PhJ	SEA/GnJ	SPRET/EiJ
rs222073178					SNP	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351541735	MGP_WTSI_1_137357995	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135389156 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419148	regulatory region 419148			693 bp distal
Rr419149	regulatory region 419149			within coordinates
Rr419150	regulatory region 419150			54 bp distal
Rr419151	regulatory region 419151			929 bp proximal