rs222080547 SNP Detail

Summary

• ID
  rs222080547
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107901668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAACACGT GACAGATGAT
  CTTGTAACCA GGCAACCAGG GGAAAGAAAG GTTCCCAAGT TCCTCTACAC AGGCAAAGGA
  GGATGGTCGC CTTCTTTGCA CTGTGCCTAC TGGCTGCAAA TATCTTTTCC AGATCTCACA
  AAGGAGATGG GGACAGCATT TAAACACCCT GACCCCCCCC TCCCACCCAC CCTACTCCCC
  R
  TCGGTACGCA CCAGGTGGGC TGACCCACTC TGCAACCGGC AGCAACCTGT CCTCCATCAT
  CACCCAAAGC TGGCTCCCAG AGAGCTTGCA GTGTCAGGAC ATTGTCAGCT AACCCCCTAG
  CCTCCTTTCC TGACCATGCC CGGCCCCGGA AGCTAAGGCA ACAGGAGAGT GTCCACCCTC
  AAGGTCTCTG GAAGTCTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324151891	CHEV_12_109173619	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222080547					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107901668 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	1383 bp upstream
Rr472389	regulatory region 472389	within coordinates