rs222081836 SNP Detail

Summary

• ID
  rs222081836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29979982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACGCTTCT TAACAGCCGC
  CTGTAGCCAG CACCCACTCG AATAGCGAAT GGCCGCGGGA AAGCCGGCGC CACCGCCCAT
  TGGACGCAGC CGGCACCCCG GCTGGCCAAT CACAAAGCTT CCGGGTAGGC TCATTGCCCA
  ATGGGAGATA AGAGGCGGAG CTAAAGGAAG GTGGGGCCAG GGCCTGTCTA TTTCACTGCT
  Y
  ACTGAGTCTG GCTGGGTTTC TCTACTAACC TGTGCTTTCT CTGTTCATAG ACACACAGCT
  TTTAACTTTG ATGGAGCTCA TCCTGTCTTT TGCAACAGTC CCGGGAAGTT ATTCAAGCTG
  TACCAGTCTC ATGGATATAG GGGTAGGGTG AAGCCAAAGA GCCGTGGGCT TGGGGTCGGG
  AACAACACCG CCCTACTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370903411	MGP_WTSI_7_31065576	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222081836					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370903411	MGP_WTSI_7_31065576	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29979982 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	476 bp upstream
Cpgi18786	CpG island 18786	within coordinates
Rr400235	regulatory region 400235	within coordinates
Rr644765	regulatory region 644765	448 bp distal
Rr644766	regulatory region 644766	493 bp distal
Rr644767	regulatory region 644767	within coordinates
Rr644768	regulatory region 644768	341 bp proximal
Rr644769	regulatory region 644769	1288 bp proximal
Rr644770	regulatory region 644770	1679 bp proximal
Tssr65667	transcription start site region 65667	415 bp downstream
Tssr65668	transcription start site region 65668	369 bp downstream
Tssr65669	transcription start site region 65669	within coordinates
Tssr71721	transcription start site region 71721	133 bp upstream
Wdr62	WD repeat domain 62	138 bp upstream