rs222083927 SNP Detail

Summary

• ID
  rs222083927
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:120882348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATACAGCT CTCCAGCTTC
  TGGAACAGTG GTCTTTAAAA TACACTTGGC AGTCTACTAA AGCTAAATAA ATACCTTCTG
  CTACATTTCA TCTAGAGTCC ATGTGTGTAA ATATAGACAT GTGCATACAT GTTGTCTGGA
  GGTCTGTCTG AGAACTCAGC AATTCTGTGT CTATTTACCC AAGAAAAATG AGTGCTGAAG
  R
  TCACAAAAGA TATATTGGAG AATACCCACA AGGATCCAAT TTATAGAGAA ATGACCCAAA
  GGCCCAGCAC AGCAGAGAAG AAAGACATGG CTATATTACC TCAACAGAAT AATATATAGG
  AAGGAAAAGC TATTGCTATG TAGTGATAGG GCACAAAAGT GGAATGAAAT AAGATATCAA
  CTGTGTGCAA TGTGATCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366481635	MGP_WTSI_5_121194292	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222083927					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366481635	MGP_WTSI_5_121194292	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:120882348 () rs orientation: forward

Symbol	Name	Function Class
Gm43068	predicted gene 43068	1753 bp upstream
Oas2	2'-5' oligoadenylate synthetase 2	within coordinates
Rr619422	regulatory region 619422	1865 bp distal
Rr619423	regulatory region 619423	1951 bp distal
Rr619424	regulatory region 619424	1778 bp distal
Tssr52959	transcription start site region 52959	679 bp upstream
Tssr52960	transcription start site region 52960	620 bp upstream
Tssr52961	transcription start site region 52961	585 bp upstream
Tssr52962	transcription start site region 52962	437 bp upstream
Tssr52963	transcription start site region 52963	390 bp upstream
Tssr52964	transcription start site region 52964	108 bp upstream
Tssr52965	transcription start site region 52965	40 bp upstream
Tssr52966	transcription start site region 52966	14 bp downstream
Tssr52967	transcription start site region 52967	40 bp downstream
Tssr52968	transcription start site region 52968	1422 bp downstream
Tssr52969	transcription start site region 52969	1479 bp downstream