rs222088554 SNP Detail

Summary

• ID
  rs222088554
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129159180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATTTCT TTGGGTTTTT
  TGAGAGATCA TTTCCAACAT TACTTTTAAA TAAAGACAGG AAAGTTATGT TCAAATTGTG
  CTATGGAACA CATTCGAATT TAGAAGGAGA TCTGTGTGTA TACAGCAAAA TTCCTGTTTA
  CATATTAGAA GGAAACAGAC AGTATCAGAA TTATACTGGT GTAAACACAG AGGATTATCT
  R
  TAAATCTTAC TCTTAATATC ATATAAGAAA TGCTGGTGTA GAACTCTAAA TAAATAAAAT
  TACCATTCTG AGTTTTTGAA ATGCCCAATA ACCATAAATG TGTTCCTTTA ATTCCTAACT
  TGTTAAGAGT TCTTGTTATT TTAGACTAAT ATTATTTTTT TCACATGATT TTGGTAAGCT
  TGTTAAAATG CTCCCATATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370045222	MGP_WTSI_6_129132235	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	A	G	G	G	A	G	G	A	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222088554					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	A	G	G	G	A	G	G	A	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370045222	MGP_WTSI_6_129132235	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129159180 () rs orientation: forward

Symbol	Name	Function Class
Clec2d	C-type lectin domain family 2, member d	within coordinates
Gm53342	predicted gene, 53342	within coordinates
Gm68195	predicted gene, 68195	1852 bp downstream
Rr368193	regulatory region 368193	828 bp downstream
Rr639387	regulatory region 639387	1592 bp distal
Rr639388	regulatory region 639388	1725 bp distal
Rr639389	regulatory region 639389	807 bp distal
Rr639390	regulatory region 639390	within coordinates
Rr639391	regulatory region 639391	274 bp proximal
Rr639392	regulatory region 639392	565 bp proximal
Tssr59096	transcription start site region 59096	1587 bp downstream
Tssr59097	transcription start site region 59097	1561 bp downstream
Tssr59098	transcription start site region 59098	1278 bp downstream
Tssr59099	transcription start site region 59099	1249 bp downstream
Tssr59100	transcription start site region 59100	1204 bp downstream
Tssr59101	transcription start site region 59101	910 bp downstream
Tssr59102	transcription start site region 59102	856 bp downstream
Tssr59103	transcription start site region 59103	354 bp downstream
Tssr59104	transcription start site region 59104	284 bp downstream
Tssr59105	transcription start site region 59105	461 bp upstream
Tssr59106	transcription start site region 59106	485 bp upstream
Tssr59107	transcription start site region 59107	715 bp upstream
Tssr59108	transcription start site region 59108	781 bp upstream
Tssr59109	transcription start site region 59109	894 bp upstream
Tssr63546	transcription start site region 63546	616 bp downstream