rs222091646 SNP Detail

Summary

• ID
  rs222091646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:115350614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAACTTC TCATTATAAT
  AAGTACTACC ACTTCCAGGA AAAATCTCTC CAATCCACTC AAGGCCCTGT CCAGGCCTCT
  GTTTTACCCA CTGCATCCAG TAGCTGGTGA AGGTGTAGCC AGAAGCCTTG CAGGACAGCT
  TCACTGAAGC CCCAGGCCTC ACCAGCTCAG CTCCAGACTG CTGCAGCTGG ACCTGGCAGT
  R
  GACACCTGTG GCGAGAAAGA CACAGTGGAT GACTTTGTCA TCGCAGGCCC TGTCTCCATT
  TCAGATTTTG AACAGGTGAG CCCCTTACCT GCAGTTTCTG ACAGGAGGAA GAGTAAGACC
  CAACTCTGTT CCATGGTTTG AGTCAGTGTG TGCAGGGACT GTGGAGAGGA CACTGATCAT
  AGGTTGTTTT CAGAGTGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ
ss387457502	MGP_WTSI_12_116625205	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ
rs222091646					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387457502	MGP_WTSI_12_116625205	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:115350614 () rs orientation: forward

Symbol	Name	Function Class
Gm19331	predicted gene, 19331	within coordinates
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv1-62-1	immunoglobulin heavy variable 1-62-1	6 bp upstream