rs222094480 SNP Detail

Summary

• ID
  rs222094480
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151858537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGTGCT TGCATGTGTG
  TGTGTTTGTG TGTGTGTGTG TATGAGTGTG TGTGCATGTA CCATAGCAGG AACATGGAAG
  GGAGAGGACA TCTTTCGACA GGCAGCTCTG TCCTTGCAGT ATGTGGGTCC CATGTTTGGC
  CACCAGTGCC TTTACCCACA GAGCCATCTC ACTGCCCCCC CCCCCTTTTA ATTCCCAAAA
  K
  GAGTCATTTT TCTTGAAGTT TTCACATGAA AGTGACACCA ATGTTCATAG GGGATACTAA
  GCACATGAAG TGGCTGTTAG CACGTTCCCA AGTTCGCAGG CAAGAAAGTG CAAATTCAGA
  AAATACCAGC AAACCAAACC TTATATACAG AAAACAGAGA AAATGCATGG TTGAGTAAGT
  TCTACCTTTA GAACAAGAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028257	CHEV_3_151815864	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222094480					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151858537 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm16198	predicted gene 16198			547 bp upstream
Gm64753	predicted gene, 64753			within coordinates
Rr587469	regulatory region 587469			575 bp distal
Rr587470	regulatory region 587470			within coordinates